A list of software I had developed or contributed towards in the last few years. Most of the code is available on Github under an open source license.
Related publication: RiboGalaxy: a browser based platform for the alignment, analysis and visualization of ribosome profiling data https://www.ncbi.nlm.nih.gov/pubmed/26821742. PubMed, NCBI.
gwips_tools is a Python program for automated download of genome annotations and reference sequences from UCSC.
ScienceFormat (now discontinued, page on Facebook) - an online manuscript preparation system for Researchers.
Implemented the functionality of importing tasks and task lists from Microsoft Excel files on Teamwork.
Related publication Transforming microbial genotyping: a robotic pipeline for genotyping bacterial strains. PubMed, NCBI.
about:authors - An application for interactive visualization of author profiles on ScienceDirect and Scopus. (participant, 2011 Apps for Science contest).
biograph- a software written in PHP for simple Lineweaver-Burke plots.
Bioinformatist.org - Wiki project with step by step instructions for installing Bioinformatics software. First prize winner, the 2007 BioWiki contest.
VLinux - Live Linux CD with Bioinformatics software pre-installed.
Built RPM packages of some Bioinformatics software. These are now integrated into the openSUSE science project.